Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31041931_31044929_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31041931 - 31044929

Intron Length:

2999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATTAT

U12 Branch Point Sequence:

GTTTCCTGTTCT

Flanking Amino Acid:

PDGKYLVTGESGHMPAVRVW

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

59.2

0.23

1.3

43.5

Major PPT

82.5

0.73

0.7

73.9

31.2

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

42.9

-0.4

3.7

77.97

43.8

Associated Gene:

Gene:

MAPKBP1

Ensembl Gene ID:

ENSAPLG00000009844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041731

31003056 - 31093289

90234

ENSAPLT00000010270

31004335 - 31093289

88955