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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31044988_31045586_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31044988 - 31045586
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
TGTTTCTGAGTG
Flanking Amino Acid:
NKQHHILNSSRKTITALAFS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
81.7
0.71
0.8
80.7
31.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
51.6
-0
1.7
60.73
41.4

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234
ENSAPLT00000010270
31004335 - 31093289
88955