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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31068193_31092946_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
31068193 - 31092946
Intron Length:
24754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCACATGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTCTTGATT
Flanking Amino Acid:
GNKREDIGSKVTLEKVLGIT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.7
0.13
1
48
39.9
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
77.9
0.96
1
87.31
31.7

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234
ENSAPLT00000010270
31004335 - 31093289
88955