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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31109801_31109962_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
31109801 - 31109962
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CATGGAGATGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GCACTCTAAACT
Flanking Amino Acid:
SAMEEAELDTEARRGTASDL
Intron Amino Acid Position:
2963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
56.4
0.14
1.1
47.4
44
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
53.4
0.18
1.7
66.56
43.9

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023063
31108935 - 31159269
50335
ENSAPLT00000010762
31108935 - 31159269
50335