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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31117102_31118742_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31117102 - 31118742
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGCT
5'SS Class:
major
3'SS Sequence:
GTTGCTTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGTTCTTTAAAC
Flanking Amino Acid:
DEKISESPMKQNPQIWSRKQ
Intron Amino Acid Position:
2506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.9
34.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
79
0.65
0.9
69.8
41.5
Minor 5ss
40.8
-1
3.2
59
45.7
Minor BPS
76.3
0.8
1.3
80.56
33.5

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010762
31108935 - 31159269
50335