About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31117102_31129847_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31117102 - 31129847
Intron Length:
12746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGTTCTTTAAAC
Flanking Amino Acid:
SEEEIDVEKVQNPQIWSRKQ
Intron Amino Acid Position:
2447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
79
0.65
0.9
69.8
41.5
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
76.3
0.8
1.3
80.56
33.5

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023063
31108935 - 31159269
50335