About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31118795_31120211_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31118795 - 31120211
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AACTTTTTACCT
Flanking Amino Acid:
TAANIRPSKEKYHAPNSSDE
Intron Amino Acid Position:
2488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
79
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.6
0.71
0.8
73
36.7
Minor 5ss
45.7
-0.5
2.8
61.4
37.1
Minor BPS
57.8
0.32
1.6
70.42
41

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010762
31108935 - 31159269
50335