About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31136445_31137923_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31136445 - 31137923
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CCACTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACAAAAT
Flanking Amino Acid:
ANMNPSGLIQVNDKRYPQAK
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82
0.72
0.8
79.7
32
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
48.5
-0
2.3
79.58
41.7

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010762
31108935 - 31159269
50335
ENSAPLT00000023063
31108935 - 31159269
50335