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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31138445_31140987_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31138445 - 31140987
Intron Length:
2543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CCTATTTCAATT
Flanking Amino Acid:
EINKEPDKFGEKSWWSSHSE
Intron Amino Acid Position:
1303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.9
0.67
0.8
77.5
35.8
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
49.8
0.06
1.6
63.61
41.8

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023063
31108935 - 31159269
50335
ENSAPLT00000010762
31108935 - 31159269
50335