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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31144237_31144735_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31144237 - 31144735
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATCCT
5'SS Class:
major
3'SS Sequence:
AAAACTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTCTAAAACT
Flanking Amino Acid:
ISLATLLTAQASLKNKPIHK
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
68.7
42.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.9
0.38
1
63.1
42.9
Minor 5ss
34.8
-1.7
3.3
50.7
45.7
Minor BPS
50.9
0.11
2
72.12
45.1

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023063
31108935 - 31159269
50335
ENSAPLT00000010762
31108935 - 31159269
50335