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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31147494_31151121_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31147494 - 31151121
Intron Length:
3628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTGCATTGACA
Flanking Amino Acid:
KQVIHPSLQEVGLKLNSVDP
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
80
0.75
1
78.6
31
Major PPT
79.6
0.67
0.8
73.8
31.3
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
60.8
0.33
1.8
72.63
39

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023063
31108935 - 31159269
50335
ENSAPLT00000010762
31108935 - 31159269
50335