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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31151456_31151797_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31151456 - 31151797
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCTTATTCAAGT
Flanking Amino Acid:
GVLFVSFASKEALDIHTVDR
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.8
0.56
1
70.4
40.2
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
49.9
0.07
2
72.74
44.3

Associated Gene:

Gene:
MGA
Ensembl Gene ID:
ENSAPLG00000010304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010762
31108935 - 31159269
50335
ENSAPLT00000023063
31108935 - 31159269
50335