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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31186294_31187003_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31186294 - 31187003
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GGGAGCTCACCA
Flanking Amino Acid:
DNLYTTHSDVWAFGVTMWEI
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
84.7
0.78
0.8
81.6
30.4
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
40.1
-0.7
2.1
45.92
42.9

Associated Gene:

Gene:
TYRO3
Ensembl Gene ID:
ENSAPLG00000010456
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010997
31183291 - 31220930
37640