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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31187164_31188545_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31187164 - 31188545
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TAGTCATTAACA
Flanking Amino Acid:
IHRDLAARNCMLDENMNVSV
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
71.6
0.49
0.8
69.8
30.7
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
72.2
0.69
1.6
78.17
38

Associated Gene:

Gene:
TYRO3
Ensembl Gene ID:
ENSAPLG00000010456
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010997
31183291 - 31220930
37640