About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31194738_31194879_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31194738 - 31194879
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
CTGTCTATCACA
Flanking Amino Acid:
LRKRRKETRFGHAFGSVVGR
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
78.2
0.63
0.8
70
36.6
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
48.8
-0.1
2
63.48
43.3

Associated Gene:

Gene:
TYRO3
Ensembl Gene ID:
ENSAPLG00000010456
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010997
31183291 - 31220930
37640