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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31203752_31207862_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31203752 - 31207862
Intron Length:
4111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GTTTCCTTCACA
Flanking Amino Acid:
SSRTATVQIKAMPLPPLNVT
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
82
0.72
0.8
76.1
32.5
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
75.9
0.81
1.7
84.27
35.8

Associated Gene:

Gene:
TYRO3
Ensembl Gene ID:
ENSAPLG00000010456
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010997
31183291 - 31220930
37640