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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31215443_31217611_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31215443 - 31217611
Intron Length:
2169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAG
5'SS Class:
major
3'SS Sequence:
TGACTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGGCTTTTGACT
Flanking Amino Acid:
VDEEHWIGFLSLKSVERTDS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
56
43
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83
0.74
0.9
80.7
36.7
Minor 5ss
29.6
-2.3
3.3
38.4
46.6
Minor BPS
61.5
0.44
1.2
72.48
38.7

Associated Gene:

Gene:
TYRO3
Ensembl Gene ID:
ENSAPLG00000010456
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010997
31183291 - 31220930
37640