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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31256273_31260402_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
31256273 - 31260402
Intron Length:
4130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GAACACCACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTCCACATCT
Flanking Amino Acid:
CWRRAVRAERRAGLQEQEGR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
52.4
0.05
1
43.3
37
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
57.4
0.31
2.1
85.67
40.2

Associated Gene:

Gene:
RPAP1
Ensembl Gene ID:
ENSAPLG00000011725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044097
31256157 - 31296556
40400
ENSAPLT00000012285
31256157 - 31296556
40400