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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31260621_31261561_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31260621 - 31261561
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTCC
5'SS Class:
major
3'SS Sequence:
TTCCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
QDSKDVVMLDDFPDVLPALT
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
70.4
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.7
75.9
26.3
Minor 5ss
41.7
-0.9
2.7
51
39.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
RPAP1
Ensembl Gene ID:
ENSAPLG00000011725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044097
31256157 - 31296556
40400
ENSAPLT00000012285
31256157 - 31296556
40400