Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31261705_31262262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31261705 - 31262262

Intron Length:

558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTATGTCTA

5'SS Class:

major

3'SS Sequence:

TTTTTTGCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGGAT

U12 Branch Point Sequence:

GTTTCTACAGCA

Flanking Amino Acid:

HITAVFSKIIERDTSAVEVT

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.1

65.4

39.9

Major BPS

62.6

0.31

1.4

63.1

44.4

Major PPT

89.2

0.88

0.7

29.8

Minor 5ss

46.5

-0.4

2.8

64.2

41.4

Minor BPS

47.5

-0.1

65.68

40.5

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400