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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31262356_31263703_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31262356 - 31263703
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACACAT
U12 Branch Point Sequence:
GGAGTCTGAGAT
Flanking Amino Acid:
TFHRSEIKSEVKVGSGRKSI
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
52.1
0.05
1.2
61
37.5
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
42.1
-0.5
1.7
52.62
41.4

Associated Gene:

Gene:
RPAP1
Ensembl Gene ID:
ENSAPLG00000011725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012285
31256157 - 31296556
40400
ENSAPLT00000044097
31256157 - 31296556
40400