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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31263885_31267707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31263885 - 31267707

Intron Length:

3823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TCAATACTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

TCTTTGTCAATA

Flanking Amino Acid:

EEAPRPGNRDDPSLVAFLKS

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

73.6

0.53

0.9

66.4

39.4

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

49.4

-0

2.2

66.51

40.8

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044097

31256157 - 31296556

40400