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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31265435_31267707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31265435 - 31267707

Intron Length:

2273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTGCT

5'SS Class:

major

3'SS Sequence:

TCAATACTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

TCTTTGTCAATA

Flanking Amino Acid:

QEQEKLLAQLDPSLVAFLKS

Intron Amino Acid Position:

310

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

71.5

38.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

73.6

0.53

0.9

66.4

39.4

Minor 5ss

-1

3.1

50.4

Minor BPS

49.4

-0

2.2

66.51

40.8

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400