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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31267915_31272539_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31267915 - 31272539

Intron Length:

4625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCCGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TTTCCTCCGAAG

Flanking Amino Acid:

KEENMKMEMTDDDLPVKPKK

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

84.2

26.4

Major BPS

77.3

0.68

81.5

Major PPT

0.54

75.9

26.6

Minor 5ss

33.8

-1.8

2.9

42.8

44.4

Minor BPS

43.2

-0.6

54.52

40.3

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400