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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31273201_31273656_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31273201 - 31273656
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
GLHHHGEEAERAGYSLQELF
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
74.4
0.55
0.8
73.2
31.7
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
RPAP1
Ensembl Gene ID:
ENSAPLG00000011725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044097
31256157 - 31296556
40400
ENSAPLT00000012285
31256157 - 31296556
40400