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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31273759_31275302_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31273759 - 31275302

Intron Length:

1544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

GTGTACCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAA

U12 Branch Point Sequence:

AGAGCTTTAACA

Flanking Amino Acid:

LQVLGRIVQKARAGEFASSL

Intron Amino Acid Position:

485

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

72.3

39.5

Major BPS

70.2

0.5

72.1

Major PPT

74.9

0.56

70.3

Minor 5ss

38.2

-1.3

3.1

50.1

46.5

Minor BPS

65.3

0.48

1.4

67.34

38.9

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400