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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31275471_31277786_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31275471 - 31277786

Intron Length:

2316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

ACTCTCCTTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TGTGCTTTTACT

Flanking Amino Acid:

RALLVSLDDEKYLDWTFSWY

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

74.2

0.6

39.4

Major PPT

75.8

0.58

0.8

69.4

30.6

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

63.6

0.51

1.7

80.6

41.3

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400