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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31277970_31279506_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31277970 - 31279506

Intron Length:

1537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATAAC

U12 Branch Point Sequence:

AGGAGTATAACA

Flanking Amino Acid:

PDVARYDVVKGLLKTRIQHR

Intron Amino Acid Position:

602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

80.7

33.8

Major BPS

60.2

0.25

1.3

39.8

Major PPT

83.5

0.75

0.7

81.6

23.4

Minor 5ss

39.7

-1.2

2.8

49.8

46.2

Minor BPS

-0.4

52.11

39.6

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400