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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31279642_31279813_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31279642 - 31279813

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTTC

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTTAT

U12 Branch Point Sequence:

GTTTCTTTAGTT

Flanking Amino Acid:

ARHSSEACSQLLDCPRLIDT

Intron Amino Acid Position:

647

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

84.7

26.5

Major BPS

73.5

0.58

1.2

63.7

43.9

Major PPT

86.9

0.83

0.7

81.7

29.8

Minor 5ss

44.1

-0.6

2.9

61.1

43.8

Minor BPS

70.8

0.73

1.5

84.55

36.4

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044097

31256157 - 31296556

40400

ENSAPLT00000012285

31256157 - 31296556

40400