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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31284301_31285127_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31284301 - 31285127

Intron Length:

827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCCCCT

5'SS Class:

major

3'SS Sequence:

TGTTGTGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTTCACTATCC

Flanking Amino Acid:

CTVELQAKLSSNSSEGSDQI

Intron Amino Acid Position:

819

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.36

1.3

57.2

47.5

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

80.2

0.68

76.9

42.1

Minor 5ss

44.7

-0.6

3.2

66.1

Minor BPS

53.5

0.09

2.2

76.7

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012285

31256157 - 31296556

40400

ENSAPLT00000044097

31256157 - 31296556

40400