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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31285330_31287406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31285330 - 31287406

Intron Length:

2077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTTATGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

GTTTTCCCATGT

Flanking Amino Acid:

GVYYRACSQQPSVNPIDCLE

Intron Amino Acid Position:

887

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.1

39.5

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

78.8

0.65

74.2

Minor 5ss

33.4

-1.9

3.4

48.4

47.3

Minor BPS

42.3

-0.5

2.2

65.32

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044097

31256157 - 31296556

40400

ENSAPLT00000012285

31256157 - 31296556

40400