Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31287517_31288861_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31287517 - 31288861

Intron Length:

1345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGATCTGATCT

Flanking Amino Acid:

PAIHSMWDLLRPCSALCNPL

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

73.8

30.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.63

0.9

73.2

36.4

Minor 5ss

37.6

-1.4

3.1

48.6

47.1

Minor BPS

52.5

0.16

1.8

73.24

43.5

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044097

31256157 - 31296556

40400

ENSAPLT00000012285

31256157 - 31296556

40400