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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31289058_31290008_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31289058 - 31290008
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GATTTTGTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
THIHKGLISKYSSVLSFGGL
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75
0.56
1
69.1
41.6
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
RPAP1
Ensembl Gene ID:
ENSAPLG00000011725
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044097
31256157 - 31296556
40400
ENSAPLT00000012285
31256157 - 31296556
40400