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Intron Name: Anas_platyrhynchos_platyrhynchos_5_31292739_31294577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31292739 - 31294577

Intron Length:

1839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCCTG

5'SS Class:

major

3'SS Sequence:

GATTTTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAT

U12 Branch Point Sequence:

TTTTGGGTGATT

Flanking Amino Acid:

LRALGVPLQQFPVPLERYTS

Intron Amino Acid Position:

1355

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

65.5

45.9

Major BPS

67.8

0.44

1.1

67.7

36.5

Major PPT

83.5

0.75

0.8

77.5

36.5

Minor 5ss

41.6

-0.9

3.1

56.4

47.8

Minor BPS

43.2

-0.4

2.8

74.24

43.6

Associated Gene:

Gene:

RPAP1

Ensembl Gene ID:

ENSAPLG00000011725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044097

31256157 - 31296556

40400

ENSAPLT00000012285

31256157 - 31296556

40400