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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31411669_31413585_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31411669 - 31413585
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCTCAGAGT
Flanking Amino Acid:
GSLKLRNCFHDKENQDLSLY
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
38.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.5
0.82
0.6
85.6
21.6
Minor 5ss
46.8
-0.3
2.5
58.3
41.6
Minor BPS
42.2
-0.5
2.1
59.79
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024278
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026482
31349356 - 31427735
78380