About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31413724_31414605_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31413724 - 31414605
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ATTTTCCTACTT
Flanking Amino Acid:
PAKEVEAVRCDSLPEGSHCS
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.1
0.66
0.8
74.3
29.2
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
55.3
0.24
1.9
78.43
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024278
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026482
31349356 - 31427735
78380