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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31414759_31415875_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31414759 - 31415875
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
FVGSTLQTTEGHFLYLRAES
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72.9
0.52
1
74
34.5
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024278
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026482
31349356 - 31427735
78380