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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31422755_31427625_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31422755 - 31427625
Intron Length:
4871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CAAACTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATCC
Flanking Amino Acid:
ITFGLDCFNDGRQTNHFSGK
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
66.6
0.37
1
58.1
41.4
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
49.7
-0
1.8
63.59
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024278
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026482
31349356 - 31427735
78380