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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31430444_31432549_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31430444 - 31432549
Intron Length:
2106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TAATATATGAGT
Flanking Amino Acid:
GQQGEDACPGANPQTQKICL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.5
39.1
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
26
-2.8
3.4
30.5
42.8
Minor BPS
44.2
-0.3
2
62.59
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032321
31427266 - 31436559
9294