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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31433393_31434234_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31433393 - 31434234
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCGATTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATG
Flanking Amino Acid:
PGVNGRTGAAGGGGGWQDVT
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
62.6
0.28
1.2
63.4
41.8
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
53.3
-0
1.8
61.75
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032321
31427266 - 31436559
9294