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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31434418_31434943_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31434418 - 31434943
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTAGCCTTACTC
Flanking Amino Acid:
TSGGGGGGYRGGHASDSDDM
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
87.9
0.85
0.7
80.6
31.4
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
54.7
0.13
1.8
62.45
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032321
31427266 - 31436559
9294