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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31435723_31436416_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31435723 - 31436416
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTCCTGATTA
Flanking Amino Acid:
VLANDNVTCTVPQTHIPEGH
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.2
42.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.6
0.87
0.7
81
36
Minor 5ss
33.8
-1.8
3.2
45.4
43.6
Minor BPS
61.3
0.35
1.7
73.26
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029901
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032321
31427266 - 31436559
9294