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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31437368_31438206_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31437368 - 31438206
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAT
U12 Branch Point Sequence:
GGCACGGTAATA
Flanking Amino Acid:
EIPRKNISLLRALGHGAFGE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
56.9
0.17
1.4
59
44.6
Major PPT
87.4
0.84
0.7
80.6
31.5
Minor 5ss
37.2
-1.5
3.6
57.4
46.8
Minor BPS
40.5
-0.7
2.5
49.14
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011988
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019471
31436630 - 31453247
16618
ENSAPLT00000012506
31434472 - 31453247
18776