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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31445126_31447691_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31445126 - 31447691
Intron Length:
2566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATTAATT
Flanking Amino Acid:
KYLEENHFIHRDIAARNCLL
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
64.9
0.55
1.8
83.51
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011988
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019471
31436630 - 31453247
16618
ENSAPLT00000012506
31434472 - 31453247
18776