Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31447785_31448392_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31447785 - 31448392

Intron Length:

608

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TAATCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

ATGCATTTAATC

Flanking Amino Acid:

GDFGMARDIYRASYYRKGGR

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

22.1

Major BPS

90.7

1.01

0.7

19.9

Major PPT

81.8

0.72

0.9

73.5

41.3

Minor 5ss

-2.1

3.1

39.9

46.1

Minor BPS

56.8

0.19

1.5

63.05

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019471

31436630 - 31453247

16618

ENSAPLT00000012506

31434472 - 31453247

18776