Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31451952_31453130_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

31451952 - 31453130

Intron Length:

1179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTCAGAGCA

5'SS Class:

major

3'SS Sequence:

CATTTAGTGCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AACCCAT

U12 Branch Point Sequence:

AACCCATTTAGT

Flanking Amino Acid:

TDHQPSVLAGHYLTVLLPQQ

Intron Amino Acid Position:

536

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.3

59.7

39.8

Major BPS

55.7

0.14

1.2

64.4

33.7

Major PPT

54.3

0.1

1.2

45.1

Minor 5ss

25.7

-2.8

23.4

36.5

Minor BPS

43.5

-0.4

2.1

58.19

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019471

31436630 - 31453247

16618

ENSAPLT00000012506

31434472 - 31453247

18776