About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31461358_31462043_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31461358 - 31462043
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGCAGT
5'SS Class:
major
3'SS Sequence:
ATCTGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAACC
Flanking Amino Acid:
ESSDFFKRHEVVGSSLLFVH
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.9
43.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.3
0.59
0.9
66.1
40.2
Minor 5ss
34.6
-1.8
3.2
48.9
46.9
Minor BPS
73.1
0.7
1.2
74.27
36.7

Associated Gene:

Gene:
ITPKA
Ensembl Gene ID:
ENSAPLG00000012584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013136
31460865 - 31496058
35194