About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31462116_31463169_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31462116 - 31463169
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTTATATATTT
Flanking Amino Acid:
EFIEGNTTILKKYLKRLQEI
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.4
0.71
0.7
72.9
32
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
47.4
-0.1
2
70.57
40.5

Associated Gene:

Gene:
ITPKA
Ensembl Gene ID:
ENSAPLG00000012584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013136
31460865 - 31496058
35194