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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31463272_31467821_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31463272 - 31467821
Intron Length:
4550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TGTGTAGTAAAA
Flanking Amino Acid:
NLGFRIEGIKKADGTCNTNF
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
84.3
0.77
0.9
80.6
37
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
42.8
-0.5
2.3
57.98
41.3

Associated Gene:

Gene:
ITPKA
Ensembl Gene ID:
ENSAPLG00000012584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013136
31460865 - 31496058
35194