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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31469931_31471803_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31469931 - 31471803
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATGTGTTTGATT
Flanking Amino Acid:
YSWVQLAGHTGSFKAADSGK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
87
0.83
0.7
85.9
27.9
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
55.6
0.26
1.8
72.25
39.7

Associated Gene:

Gene:
ITPKA
Ensembl Gene ID:
ENSAPLG00000012584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013136
31460865 - 31496058
35194